PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.E5HY5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 236aa    MW: 26957.4 Da    PI: 8.545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.E5HY5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-057089120
                 EEETTTTEEESSHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                 + Cp C k+F+r  n++ H+
  Aradu.E5HY5 70 FACPLCFKTFNRYNNMQMHM 89
                 78*****************9 PP

2zf-C2H214.10.00013154176123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k F  + + ++H +++
  Aradu.E5HY5 154 FTCRKCSKAFAVRGDWRTHEKNC 176
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.68E-56592No hitNo description
PROSITE profilePS501579.6197097IPR007087Zinc finger, C2H2
SMARTSM003550.837092IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.0E-67089IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-6136174No hitNo description
Gene3DG3DSA:3.30.160.606.7E-5140174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEVQNNNNNK VPLHLGLQST VVVQDSSVLE EDEEEEKITV ASEYVMSNGI NRGQYWIPTP  60
TQILIGPTQF ACPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLKLPCYCCA  120
AGCKNNIDHP RAKPLKDFRT LQTHYKRKHG LKPFTCRKCS KAFAVRGDWR THEKNCGKRW  180
YCSCGSDFKH KRSLKDHIKA FGNGHKSYAI NDHLCVDQDD NNGAASEVEE NDSFHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952592.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0B2RCN11e-130A0A0B2RCN1_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLI1MDA51e-129I1MDA5_SOYBN; Uncharacterized protein
TrEMBLC6TDH51e-129C6TDH5_SOYBN; Putative uncharacterized protein
STRINGGLYMA15G03830.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-117C2H2 family protein